Graziela S. Araújo, Nalvo F. Almeida Jr..
In this paper, we propose and compare several distance-based phylogenetic measures from whole genome comparison which take into account gene content and gene order conservation. We show that it is possible to infer phylogenetic issues from whole genome comparison, since gene content and gene order are conserved between closely related species.
http://www.lbd.dcc.ufmg.br:8080/colecoes/wob/2002/002.pdf
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